Chr:
Chr11
Start:
959655
End:
959675
Strand:
+
Sequence:
UAUAUAUACUAUCUACUGGUA
Length:
21
precursor sequence:
UGACGCAUAUCGGUGUUCACUAUAUAUACUAUCUACUGGUAAGUAUAUUAAAGAUAUACUUACCAGUAGAUAGUAUAUAUAGCGAACACCGAUAUACGUCGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
32
NEP:
11.68%
LE_num:
LEP:
16.79%
ME_num:
MEP:
56.93%
HE_num:
HEP:
14.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
lamina_joint
Tau :
0.81
Avg Expression:
43.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -3.47608541304891 | 0.00119237692011884 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -3.77912180691348 | 0.0128516768180795 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.20032373095847 | 0.0178200174999434 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.7677975473896 | 4.88175274057393e-13 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.3202637166518 | 6.80653600864232e-12 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.63505960744689 | 6.25138618594643e-15 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -1.02793622251257 | 1.11225284686814e-05 |
| 8 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.98042857447717 | 0.0211243857761767 |