Chr:
Chr3
Start:
35561723
End:
35561746
Strand:
-
Sequence:
ACGAACGGUUAAAGUUGGACGCGG
Length:
24
precursor sequence:
AAGUGCAGCCAUGAGUUUUCGCGCCCAACUUUGAUCGUCCGUCUUAUUUGAAAUUUUUUUAUAAUUAGCAUUUUUGUUAUUAUGAGAUGAUAAAACAUGAAUAGUACUUUCCUCGUGACUUAUGUUUUUAAUUUUUUUAAAAAAAAAUUUCAAAUAAGACGAACGGUUAAAGUUGGACGCGGAAAACUAUGGCUGCACUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
24
NEP:
8.76%
LE_num:
LEP:
7.66%
ME_num:
MEP:
64.23%
HE_num:
HEP:
19.34%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.95
Avg Expression:
166.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.75016662857111 | 3.00727164203694e-05 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.1323871821013 | 0.00439484132953932 |
| 3 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.09287159502049 | 1.80582447163255e-12 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.81485959929422 | 0.000535398942455513 |