RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR11339u_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

25244496

End:

25244516

Strand:

+

Sequence:

UAUGAAUGUGUGCAAUGCUAG

Length:

21

precursor sequence:

UUCAGGUUAUAAGACUUUCUAGCAUUGCCCACAUUCAUAUAUAUGUUAAUGAAUCUAGACACACAUUCAUAUAUAUGUCUAGAUUCAUUAACAUAUAUAUGAAUGUGUGCAAUGCUAGAAAGUCUUAUAAUAUGAAAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

77

NEP:

28.1%

LE_num:

45

LEP:

16.42%

ME_num:

139

MEP:

50.73%

HE_num:

13

HEP:

4.74%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.74

Avg Expression:

8.97

Tip: Osa-miR11339u_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base1.503106733428632.1732235452033e-08
2BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly-1.162085828726490.00998523812847308