RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2283c_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

3821417

End:

3821437

Strand:

+

Sequence:

UUGUUUCACCUAGGACGAGGA

Length:

21

precursor sequence:

UCACCCGCGAGAUGACGUGGUUGUUUCACCUAGGACGAGGACAUGGCAUCCUAUUACCAGCCAUCGCACGAAAUUAAUAUAAUGCCACGUCCUCAUCCUAGAUAGAACAACCACGUCAUCUCACGGAUGAAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

3

NEP:

1.09%

LE_num:

16

LEP:

5.84%

ME_num:

242

MEP:

88.32%

HE_num:

13

HEP:

4.74%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

blade

Tau :

0.73

Avg Expression:

10.56

Tip: Osa-miRN2283c_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-1.200788603203550.04587515470709