RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR812ap_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

16750018

End:

16750039

Strand:

-

Sequence:

UGACUGCACUUAAAAUGGGACG

Length:

22

precursor sequence:

CUCCCUUCAUCCCAUUUUAAGUGCAACCAUAAGUUUUCGCGCCCAAUUUUGAUCGUCCGUCAUAUUUGAAAAAAAUUUAUAAUUAGUAUUUUUGUUGUUAUGAGAUGAUAAAAUAUAAAUAGUAUUUUAUUCGUGACUUAUGUUUUUAAUUUUUUUCAGAAAAAAUUUAAAUAAGACGGAUAGUCAAAGUUGGGCACGGAAAACCAUGACUGCACUUAAAAUGGGACGGAGGGAGUAGGAGUUGGUUUAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

56

NEP:

20.44%

LE_num:

89

LEP:

32.48%

ME_num:

129

MEP:

47.08%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.73

Avg Expression:

1.73

Tip: Osa-miR812ap_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-4.011768022543353.32238032476217e-08