Chr:
Chr1
Start:
33588810
End:
33588830
Strand:
+
Sequence:
AUAGCUCGAUGCCAGAAUGAU
Length:
21
precursor sequence:
UUUCCUCGUUCAUGGUUCGAUAUUCUGGUGUCCUAGGCGUAGAGGAACCACACCAAUCCAUCCUGAAUUUGGUGGUUAAACUCUACUGCGGUGACGAUACUGUAGGGGAGGUCCUACGGCAAAAUAGCUCGAUGCCAGAAUGAUAAAAAGCUUAACACCUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
6
NEP:
2.19%
LE_num:
LEP:
3.65%
ME_num:
MEP:
18.98%
HE_num:
HEP:
75.18%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
blade
Tau :
0.90
Avg Expression:
2888.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -1.9121119112859 | 2.20025359362424e-23 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -1.54974103548456 | 3.93861313152963e-16 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 2.37632751852742 | 1.56384752112478e-13 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.42776832991205 | 8.40140179485859e-18 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 1.89847935883243 | 1.36753251289441e-32 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.64513948918732 | 1.15207179852375e-05 |
| 7 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.80807160255621 | 0.0238387816069309 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.25011594945144 | 5.73128425217638e-15 |
| 9 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.32737831872051 | 3.72402582312166e-10 |
| 10 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.21497275420977 | 0.000419333121541293 |
| 11 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 1.66485656699979 | 1.8512667607566e-08 |