Chr:
Chr1
Start:
22934987
End:
22935007
Strand:
-
Sequence:
UGGGAUAUGCUAGAAUGACUU
Length:
21
precursor sequence:
UCCUCCGUUUCACGAUGUAAGUCAUUCUAGCAUUUCCUAUAUUCAUAUUGAUGUUAAUGAAUCUAGAUAAAUAUAUAUGCCUAGAUUUAUUAACAUCAAUAUGAAUGUGGGAUAUGCUAGAAUGACUUACAUUGUGAAACGGAGGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
72
NEP:
26.28%
LE_num:
LEP:
27.37%
ME_num:
MEP:
44.53%
HE_num:
HEP:
1.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.84
Avg Expression:
6.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 4.63751372814193 | 0.0239513794820465 |