Chr:
Chr12
Start:
16586413
End:
16586433
Strand:
-
Sequence:
CGGUCUUGUGGUAAGAACUGU
Length:
21
precursor sequence:
GUGUUGCAUAUUCAUAGGCCCGGUCUUGUGGUAAGAACUGUGUAGUUCGUUAACUCGCUACACGGUUCUUGCCACAAGACCGAGUUUGUGAAUAUGCAAAGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
184
NEP:
67.15%
LE_num:
LEP:
20.07%
ME_num:
MEP:
11.31%
HE_num:
HEP:
1.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.99
Avg Expression:
58.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -4.81837432099772 | 0.00826846602614295 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 2.96968737196236 | 0.00596392805864347 |