Chr:
Chr3
Start:
22088085
End:
22088105
Strand:
-
Sequence:
UGCUCUGAUACCAAUUGUCGG
Length:
21
precursor sequence:
UUAGAUUGGCUUGGAGUGGUGACAACUGGUAGCAGAGCAAUGUCAUCUCCACUUGCCGGUUGUUCCUGGUAUGUCGAGGGAUACUGGUGCUGACAUUGCUCUGAUACCAAUUGUCGGCACUCUAGGCCAAUCAUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
134
NEP:
48.91%
LE_num:
LEP:
29.2%
ME_num:
MEP:
18.98%
HE_num:
HEP:
2.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
9.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -4.32790794381617 | 0.00524252995617559 |
2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -4.29161306554104 | 0.000469626271392618 |
3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -7.8436997034515 | 6.86096138999833e-06 |
4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -6.56239010038295 | 0.000669755038318844 |
5 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 5.11119068503042 | 2.66620864389777e-07 |