Chr:
Chr7
Start:
23952866
End:
23952889
Strand:
-
Sequence:
AGAAAUAUACCGUCGGUCUCGCAC
Length:
24
precursor sequence:
CGGGAUACAAAUUUUUUUACAGAAAUAUACCGUCGGUCUCGCACAACCGUUACGCGAAAGUGCGCUUUCCCUAAGCGAUACCGCCUGCGACGUCAUUCCCACGUCACUUUCGCUUAACGGUUGAGCGAGACCGACGGUAUAUUUCCCUAAAAAAUUUUACAUCCCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
5
NEP:
1.82%
LE_num:
LEP:
6.2%
ME_num:
MEP:
82.12%
HE_num:
HEP:
9.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.81
Avg Expression:
13.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -1.67166096756533 | 0.0478023167084735 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.37037991505175 | 0.012040667065757 |
| 3 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.48874411318905 | 1.15691735027267e-08 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -3.0738241533898 | 4.9845674855991e-05 |