RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2173_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

16257970

End:

16257990

Strand:

+

Sequence:

UGCACUUUGCAAGUUCGUGGA

Length:

21

precursor sequence:

CAAGUUUAGAGACCUUGAUAUGCACUUUGCAAGUUCGUGGACCUAAGUGAAACCUCCUGACAAGUUUAAGGACCGCUGGUGUAUUUUACUCUUGUGGUUUUAUCCAUACGUGCUUGUGCUGCAGUCCAUUUUGCUGGUGUAGUGAUAUUAGGGGGGCCAUGCAUUAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

18

NEP:

6.57%

LE_num:

30

LEP:

10.95%

ME_num:

206

MEP:

75.18%

HE_num:

20

HEP:

7.3%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.77

Avg Expression:

9.96

Tip: Osa-miRN2173_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miRN2173_PmiREN is not a differential expression ncRNA.