RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR1861a	PmiREN	Chr4	6536571	6536591	+	Y/N
Osa-miR1861c	PmiREN	Chr2	20716240	20716262	+	Y/N
Osa-miR168	PmiREN	Chr2	1553210	1553230	-	Y/N
Osa-miR5788a	PmiREN	Chr3	30006963	30006983	+	Y/N
Osa-miR5788b	PmiREN	Chr1	38985769	38985789	-	N/N
Osa-miR5788c	PmiREN	Chr2	27384263	27384283	-	Y/N
Osa-miR5788d	PmiREN	Chr2	15572963	15572983	-	Y/N
Osa-miR5788f	PmiREN	Chr9	11842898	11842918	+	Y/N
Osa-miR11342a	PmiREN	Chr11	23289399	23289420	-	Y/N
Osa-miR11342b	PmiREN	Chr4	23201075	23201095	+	N/N
Osa-miR812af	PmiREN	Chr3	1453547	1453570	-	Y/N
Osa-miR812ag	PmiREN	Chr1	23374135	23374156	-	Y/N
Osa-miR812ad	PmiREN	Chr6	30201985	30202008	-	Y/Y
Osa-miR812ae	PmiREN	Chr3	17638738	17638761	+	Y/Y
Osa-miR812ab	PmiREN	Chr8	18137891	18137912	+	Y/N
Osa-miR812ac	PmiREN	Chr3	16194432	16194455	-	Y/N
Osa-miR166c	PmiREN	Chr3	3487877	3487897	+	Y/N
Osa-miR166m	PmiREN	Chr8	23045502	23045521	+	Y/Y
Osa-miR812al	PmiREN	Chr6	27596226	27596249	-	Y/N
Osa-miR812aa	PmiREN	Chr7	27140878	27140899	-	Y/N
Osa-miR812ak	PmiREN	Chr8	2687961	2687984	+	Y/N
Osa-miR166j	PmiREN	Chr3	30392799	30392819	-	Y/N
Osa-miR396f	PmiREN	Chr2	35636692	35636712	-	Y/N
Osa-miRN2333	PmiREN	Chr10	14035811	14035831	+	N/N
Osa-miRN2338	PmiREN	Chr12	22033257	22033277	+	N/Y
Osa-miRN2339	PmiREN	Chr12	24831791	24831811	+	N/Y
Osa-miR812am	PmiREN	Chr6	21245498	21245521	-	Y/Y
Osa-miR812aj	PmiREN	Chr2	27756493	27756516	+	Y/N
Osa-miR166i	PmiREN	Chr3	25295065	25295085	+	Y/N
Osa-miRN2295	PmiREN	Chr12	24290567	24290587	+	N/Y
Osa-miRN2297	PmiREN	Chr12	21727741	21727761	-	N/Y
Osa-miRN2296	PmiREN	Chr12	24862194	24862214	+	Y/Y
Osa-miR5152a	PmiREN	Chr5	28910228	28910248	-	N/N
Osa-miR812ah	PmiREN	Chr3	35561723	35561746	-	Y/Y
Osa-miRN2293	PmiREN	Chr4	18680363	18680382	-	N/Y
Osa-miR5152b	PmiREN	Chr5	29148351	29148371	+	N/N
Osa-miR482	PmiREN	Chr4	21654404	21654425	-	Y/Y
Osa-miR812ai	PmiREN	Chr12	24677388	24677411	+	Y/N
Osa-miRN2299	PmiREN	Chr12	21011265	21011285	-	N/Y
Osa-miRN2336	PmiREN	Chr12	16207990	16208010	+	N/Y
Osa-miRN2334	PmiREN	Chr10	3705965	3705985	+	N/N
Osa-miR812ar	PmiREN	Chr10	19333224	19333243	+	Y/N
Osa-miRN2173	PmiREN	Chr7	16257970	16257990	+	N/N
Osa-miR531e	PmiREN	Chr5	8564911	8564932	-	Y/N
Osa-miR812ap	PmiREN	Chr7	16750018	16750039	-	Y/N
Osa-miR812aq	PmiREN	Chr1	27167165	27167186	+	Y/N
Osa-miR1430	PmiREN	Chr12	6825111	6825133	-	Y/N
Osa-miR1432	PmiREN	Chr7	23401783	23401804	-	Y/Y
Osa-miR5837	PmiREN	Chr11	24702182	24702202	-	N/N
Osa-miRN2260b	PmiREN	Chr6	27970697	27970717	-	N/Y
Osa-miR5831	PmiREN	Chr5	28577938	28577960	+	Y/N
Osa-miR5809b	PmiREN	Chr4	23527612	23527633	-	N/N
Osa-miR5537a	PmiREN	Chr10	11112761	11112782	+	N/N
Osa-miR5537b	PmiREN	Chr11	19389088	19389109	+	N/N
Osa-miR5537c	PmiREN	Chr6	3109261	3109282	-	N/N
Osa-miRN2276b	PmiREN	Chr2	23015418	23015438	-	Y/N
Osa-miRN2276c	PmiREN	Chr4	34592807	34592827	-	Y/N
Osa-miRN2276a	PmiREN	Chr11	149510	149530	-	Y/N
Osa-miRN2285b	PmiREN	Chr10	3019375	3019394	-	Y/Y
Osa-miR11339j	PmiREN	Chr3	11025951	11025972	-	N/N
Osa-miRN2285c	PmiREN	Chr11	21857897	21857916	+	Y/Y
Osa-miR11339i	PmiREN	Chr12	22138563	22138586	+	N/N
Osa-miR821	PmiREN	Chr8	19925167	19925189	-	N/N
Osa-miR530	PmiREN	Chr4	8303664	8303684	-	Y/Y
Osa-miRN2237a	PmiREN	Chr4	9137284	9137303	-	Y/N
Osa-miRN2237c	PmiREN	Chr8	22325694	22325715	+	Y/N
Osa-miRN2237b	PmiREN	Chr10	10807210	10807231	-	Y/N
Osa-miRN2294	PmiREN	Chr9	9174506	9174526	+	N/Y
Osa-miRN2291	PmiREN	Chr9	8969545	8969565	+	Y/Y
Osa-miRN2290	PmiREN	Chr8	10061176	10061196	-	N/Y
Osa-miRN2205	PmiREN	Chr5	3877018	3877038	+	Y/N
Osa-miRN2292	PmiREN	Chr11	9840141	9840161	+	N/N
Osa-miR9777	PmiREN	Chr2	1797977	1797998	-	Y/N
Osa-miRN2369	PmiREN	Chr12	14944232	14944252	+	N/Y
Osa-miRN2368	PmiREN	Chr11	23042124	23042144	-	N/N
Osa-miRN2365	PmiREN	Chr7	6687478	6687498	+	N/N
Osa-miRN2367	PmiREN	Chr7	5730366	5730386	+	N/N
Osa-miRN2366	PmiREN	Chr7	15967943	15967963	-	N/Y
Osa-miRN2361	PmiREN	Chr4	12965130	12965150	+	N/N
Osa-miRN2360	PmiREN	Chr4	17717355	17717375	+	N/N
Osa-miRN2363	PmiREN	Chr6	24709936	24709956	+	N/Y
Osa-miRN2362	PmiREN	Chr5	24797708	24797728	+	Y/N
Osa-miRN2285d	PmiREN	Chr11	6974869	6974888	-	Y/Y
Osa-miRN2285e	PmiREN	Chr4	598059	598078	+	Y/Y
Osa-miRN2285f	PmiREN	Chr6	23376294	23376313	-	Y/Y
Osa-miRN2285a	PmiREN	Chr10	17481035	17481054	+	Y/Y
Osa-miR5536	PmiREN	Chr2	19457533	19457553	+	N/N
Osa-miRN2228a	PmiREN	Chr4	4926830	4926850	-	N/Y
Osa-miRN2281a	PmiREN	Chr4	16545760	16545780	+	Y/N
Osa-miRN2229b	PmiREN	Chr8	26953695	26953715	-	Y/Y
Osa-miRN2229c	PmiREN	Chr8	705385	705405	+	Y/Y
Osa-miRN2229a	PmiREN	Chr5	7377922	7377942	-	Y/Y
Osa-miRN2281b	PmiREN	Chr8	3513112	3513132	+	Y/N
Osa-miRN2318	PmiREN	Chr12	7555497	7555517	+	N/N
Osa-miRN01	RiceNCexp	Chr1	2068759	2068778	-	N/N
Osa-miRN02	RiceNCexp	Chr1	2309154	2309173	-	Y/N
Osa-miRN03	RiceNCexp	Chr1	2309230	2309250	-	Y/Y
Osa-miRN04	RiceNCexp	Chr1	4766346	4766366	-	Y/N
Osa-miRN05	RiceNCexp	Chr1	4766347	4766367	-	Y/N
Osa-miRN06	RiceNCexp	Chr1	4766354	4766373	-	N/N
Osa-miRN07	RiceNCexp	Chr1	4766362	4766382	-	N/N
Osa-miRN08	RiceNCexp	Chr1	4766513	4766533	-	N/N
Osa-miRN09	RiceNCexp	Chr1	11666844	11666864	-	Y/Y
Osa-miRN10	RiceNCexp	Chr1	11667021	11667041	-	N/N
Osa-miRN11	RiceNCexp	Chr1	11667043	11667064	-	N/N
Osa-miRN12	RiceNCexp	Chr1	11667044	11667064	-	N/N
Osa-miRN13	RiceNCexp	Chr1	12301814	12301833	+	Y/N
Osa-miRN14	RiceNCexp	Chr1	14130486	14130507	+	N/N
Osa-miRN15	RiceNCexp	Chr1	18049428	18049448	+	N/N
Osa-miRN16	RiceNCexp	Chr1	22524220	22524239	-	Y/N
Osa-miRN17	RiceNCexp	Chr1	39048236	39048255	+	N/N
Osa-miRN18	RiceNCexp	Chr1	41260752	41260771	-	Y/N
Osa-miRN19	RiceNCexp	Chr2	4345573	4345594	+	N/N
Osa-miRN20	RiceNCexp	Chr2	18307627	18307646	-	N/N
Osa-miRN21	RiceNCexp	Chr2	18942099	18942118	-	N/N
Osa-miRN22	RiceNCexp	Chr2	24120061	24120081	-	Y/Y
Osa-miRN23	RiceNCexp	Chr2	25135004	25135024	-	Y/N
Osa-miRN24	RiceNCexp	Chr2	27148168	27148188	+	Y/N
Osa-miRN25	RiceNCexp	Chr2	31205965	31205984	-	Y/Y
Osa-miRN26	RiceNCexp	Chr2	34280395	34280414	+	Y/Y
Osa-miRN27	RiceNCexp	Chr3	22088085	22088104	-	N/N
Osa-miRN28	RiceNCexp	Chr3	25574715	25574736	+	N/N
Osa-miRN29	RiceNCexp	Chr3	31059086	31059106	-	N/Y
Osa-miRN30	RiceNCexp	Chr3	32454996	32455015	+	Y/N
Osa-miRN31	RiceNCexp	Chr3	33130637	33130656	+	N/Y
Osa-miRN32	RiceNCexp	Chr4	19420175	19420194	+	Y/N