RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN29_RiceNCexp

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

31059086

End:

31059106

Strand:

-

Sequence:

ACGAACGGUUAAAGUUGGACG

Length:

21

precursor sequence:

UCCAACUUUGAUCGUCCAUCUUAUUUGAAAAUUUUUUAUAAUUAGUAUUUUUGUUGUUAUGAGAUGAUAAGACAUAAAUAAUACUUUACUCGUGACUUAUGUUUUUAAUUUUUUAAAAAAAAUUUUGAAACAAAACGAACGGUUAAAGUUGGACG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

138

NEP:

50.36%

LE_num:

83

LEP:

30.29%

ME_num:

47

MEP:

17.15%

HE_num:

6

HEP:

2.19%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.95

Avg Expression:

40.62

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miRN29_RiceNCexp is not a differential expression ncRNA.