RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN20_RiceNCexp

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

18307627

End:

18307646

Strand:

-

Sequence:

UUUACGAGACGAAUCUAACG

Length:

20

precursor sequence:

UUUACGAGACGAAUCUAACGAGAUAUAUUAAUUCAUGAUUUGCUAUAGUGAUGCUACAGUAAUCAGCUGCUAAUCAUGGAUUAAUACACAUAAUUAGAUUCGUCUCGCAAAAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

132

NEP:

48.18%

LE_num:

95

LEP:

34.67%

ME_num:

47

MEP:

17.15%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.79

Avg Expression:

0.61

Tip: Osa-miRN20_RiceNCexp is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miRN20_RiceNCexp is not a differential expression ncRNA.