Chr:
Chr5
Start:
7377922
End:
7377942
Strand:
-
Sequence:
CUGGCGCUGAACUUAGACACC
Length:
21
precursor sequence:
UUUUUUCAGCGCCAAAUCAUCUGGCGCUGAACUUAGACACCUCAGUGUCACGUCAACUGGCGCUGAAUACCGUGCCACCGUGGAUGGGAGGCUAAGUCAGCGUGCCAACGCACAUUCAACACCAUGCUAUUUAGCGCUGAGGUGUCUAAGUUUAGCGCCACACGAUUUGGCGCUGAACAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
44
NEP:
16.06%
LE_num:
LEP:
21.9%
ME_num:
MEP:
56.57%
HE_num:
HEP:
5.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.95
Avg Expression:
30.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -1.67808971280507 | 3.61663282331144e-08 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.46918857809665 | 1.01987554160256e-13 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.83711580550777 | 0.017986912706127 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.26295989693272 | 0.0257501908996532 |
| 5 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.69255649728381 | 0.000198056569754705 |