| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 1.65 | MC |
| SRR3140955 | leaf | "45C, 12h" | 0.40 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 1.14 | MC |
| SRR8258050 | leaf_sheath | R_bph | 1.78 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 2.80 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 2.22 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 1.83 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 1.82 | MC |
| SRR6810106 | panicle | panicle | 3.66 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.15 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1.15 | MC |
| SRR10690151 | leaf | IRBB5_0h | 0.44 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 1.02 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 0.97 | MC |
| SRR1061625 | panicle | Heat Stress | 4.80 | MC |
| SRR1061624 | panicle | Normal | 6.90 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 9.00 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 9.85 | MC |
| SRR1061620 | flag_leaf | Normal | 7.43 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 0.61 | MC |
| SRR10704058 | leaf | Glyphosate | 10.75 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 0.30 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.30 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.17 | MC |
| SRR504363 | leaf | 93-11 X NPB | 1.67 | MC |
| SRR9070101 | shoot_base | WT_base | 2.59 | MC |
| SRR6810105 | panicle | panicle | 4.70 | MC |
| SRR447135 | shoot | As(III) 20 uM | 2.00 | MC |
| SRR447134 | shoot | As(III) 80 uM | 0.80 | MC |
| SRR447133 | shoot | As(III) 20 uM | 0.46 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 1.15 | MC |
| SRR1849765 | leaf | Control 30min | 9.46 | MC |
| SRR1849767 | leaf | Control 30min | 10.88 | MC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 1.27 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 10.25 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 4.67 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 22.02 | MC |
| SRR6498701 | leaf | "WT, Control" | 14.72 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 0.86 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 24.59 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 1.37 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 1.30 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.92 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.76 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.50 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 5.33 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 15.73 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 19.16 | MC |
| SRR1849773 | leaf | Control 120min | 13.18 | MC |
| SRR1849772 | leaf | Control 120min | 5.50 | MC |
| SRR1849771 | leaf | Control 120min | 15.31 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 11.61 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 0.30 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.08 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 1.03 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.78 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 2.33 | MC |
| SRR447136 | shoot | As(III) 80 uM | 0.78 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.15 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 2.46 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.56 | MC |
| SRR10704060 | leaf | Glyphosate | 4.86 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 2.29 | MC |
| SRR3140952 | leaf | "45C, 0h" | 0.97 | MC |
| SRR976171 | lamina_joint | wild type | 1.44 | MC |
| SRR4098209 | leaf | No treatment | 0.66 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 0.44 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.67 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.13 | MC |
| SRR9070100 | shoot_base | WT_base | 3.42 | MC |
| SRR4098205 | seedling | Heat (50C) | 0.73 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.62 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.77 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.44 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.49 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.18 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 2.33 | MC |
| SRR8649147 | panicle | panicle tissue | 0.79 | MC |
| SRR10704055 | leaf | CK | 2.25 | MC |
| SRR10704057 | leaf | CK | 4.35 | MC |
| SRR10704056 | leaf | CK | 1.51 | MC |
| SRR10704059 | leaf | Glyphosate | 2.05 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.75 | MC |
| SRR9070102 | shoot_base | WT_base | 2.21 | MC |
| SRR6498699 | leaf | "WT, Control" | 23.46 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.51 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 0.67 | MC |
| SRR10690144 | leaf | IR24_0h | 0.65 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 0.62 | MC |
| SRR10690143 | leaf | IR24_0h | 0.74 | MC |
| SRR10690142 | leaf | IR24_0h | 0.31 | MC |
| SRR2646852 | panicle | FP | 0.63 | MC |
| SRR2646853 | panicle | FP | 0.53 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.61 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.53 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 0.72 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 0.36 | MC |
| SRR2646854 | panicle | SP | 0.55 | MC |
| SRR2646855 | panicle | SP | 0.62 | MC |
| SRR4098203 | seedling | No treatment | 2.36 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.33 | MC |
| SRR6365692 | panicle | Wild type | 2.86 | MC |
| SRR6365693 | panicle | Wild type | 2.98 | MC |
| SRR6365694 | panicle | Wild type | 3.59 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 4.68 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 0.52 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1.33 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.45 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 2.20 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 0.72 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.21 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.09 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 0.48 | MC |
| SRR1849784 | root | Control 120min | 1.04 | MC |
| SRR6365691 | panicle | Wild type | 3.49 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 0.96 | MC |
| SRR3110556 | shoot | shoot control | 4.51 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.90 | MC |
| SRR1061616 | panicle | Normal | 0.24 | MC |
| SRR1061617 | panicle | Heat Stress | 0.44 | MC |
| SRR1061615 | panicle | Heat Stress | 0.34 | MC |
| SRR1061613 | panicle | Heat Stress | 0.48 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.78 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 1.48 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.44 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 1.96 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 1.88 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 1.17 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.42 | MC |
| SRR3140954 | leaf | "45C, 12h" | 0.21 | MC |
| SRR089621 | panicle | cold | 0.40 | MC |
| SRR3140957 | leaf | "45C, 24h" | 0.32 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 0.92 | MC |
| SRR2544786 | embryo | dry seed | 0.19 | MC |
| SRR4098172 | seedling | Cold (4C) | 1.08 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.79 | MC |
| SRR3140953 | leaf | "45C, 0h" | 0.46 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 0.70 | MC |
| SRR10956502 | panicle | WT | 2.55 | MC |
| SRR10956501 | panicle | WT | 2.26 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 0.80 | MC |
| SRR8258048 | leaf_sheath | R_bph | 3.14 | MC |
| SRR1740023 | seedling | IR64-Control | 5.17 | MC |
| SRR1740025 | seedling | PK-Control | 2.61 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 2.84 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 2.35 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.45 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.23 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 1.33 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.30 | MC |
| SRR1654490 | leaf | wild type | 0.70 | MC |
| SRR3110557 | shoot | shoot treated | 5.55 | MC |
| SRR5940086 | panicle | Wild type | 0.52 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.20 | MC |
| SRR8258051 | leaf_sheath | R_bph | 3.60 | MC |