Chr:
Chr2
Start:
1797977
End:
1797998
Strand:
-
Sequence:
GUAGCAAAUAUAUCUGAGCACA
Length:
22
precursor sequence:
UUUGUGGUUUUGGUGGAUUGUGCCGUGAUGAUUGCUCGCUUAUUUCUGACACCUCUUGUAUGAGAAGUUGUUCUUUCCUCUUCCUUGGGGAUGAGGAGGAGCACUUCGCUGAGCAGAUUGUAGCAAAUAUAUCUGAGCACACGCAUCCUCGCUCAUUAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
6.57%
ME_num:
MEP:
84.31%
HE_num:
HEP:
6.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.80
Avg Expression:
14.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.38918524507344 | 4.32694344704204e-14 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.84005087087654 | 3.58962988842329e-09 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.98146025696358 | 0.00311911372305073 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 2.30381248652395 | 8.35835506632299e-07 |