Chr:
Chr1
Start:
22524220
End:
22524239
Strand:
-
Sequence:
GUGACAGAAGAGAGUGAGCA
Length:
20
precursor sequence:
UUUGAUAUCUACUCGUACUAGGAGGGUGACAGAAGAGAGUGAGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
32
NEP:
11.68%
LE_num:
LEP:
3.28%
ME_num:
MEP:
45.62%
HE_num:
HEP:
39.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.89
Avg Expression:
267.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.99059288500731 | 9.5488389006454e-15 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.66308068098832 | 7.11246914949954e-15 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.94619358299713 | 0.00501184766571337 |
| 4 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.840254594586 | 1.57392613179257e-16 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.11188663447102 | 6.76892292342983e-08 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.716199029545 | 3.68011065690717e-28 |