RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN02_RiceNCexp

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

2309154

End:

2309173

Strand:

-

Sequence:

CAUGCGAUCCUUUUGGAGGC

Length:

20

precursor sequence:

AUCCAAAGGGAUCGCAUUGAUCCUUCAUCGCUCUCGCUCGCUUCCAUGGCGGUCGUCGUCUACAAGCAGCUUGACGGAUCAUGCGAUCCUUUUGGAGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

146

NEP:

53.28%

LE_num:

60

LEP:

21.9%

ME_num:

68

MEP:

24.82%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.89

Avg Expression:

3.24

Tip: Osa-miRN02_RiceNCexp is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO174.495152212911223.25890445824204e-07
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA4.088711433566330.0182936120841098