RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2362_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

24797708

End:

24797728

Strand:

+

Sequence:

GUGAGUGAAUGUAAUUGGCGG

Length:

21

precursor sequence:

AACUACUCCAUGGACAUUCCAUUGAUAACAUAUCCCAUAUAAAUAAGCAGACAUCAGUUGCGGUGUUGACAUACAAGCAUGUAUAUAUUAAUAUGCCUAUCAAGUCAGAGAGUCUAAUGUGUAUGUGCUGGUAAUAAUUUUUUGGAGUGGGAUGCAUGCGGAACACAAGGCCGGCUUGUGGGUCUGGAGAUGUAUGUGAGUGAAUGUAAUUGGCGGGGUACUAGUGUUCAUGGAUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

240

NEP:

87.59%

LE_num:

12

LEP:

4.38%

ME_num:

20

MEP:

7.3%

HE_num:

2

HEP:

0.73%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.97

Avg Expression:

4.40

Tip: Osa-miRN2362_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1zhonghua11 // panicle // wild-type--/--zhonghua11 // panicle // rdr701-1 mutant-3.141693327161290.000883453761597386