Chr:
Chr5
Start:
3877018
End:
3877038
Strand:
+
Sequence:
UGACCGUAGAAACUAGCAUAG
Length:
21
precursor sequence:
GUGAUGGCUGCCCACCAUGGUGACCGUAGAAACUAGCAUAGAAAAAAGUAGAUAUCUCAAGUGACUUUGUUCAUUUACGUUGGGAUAGACAAGUAACUACCUUUUCUAUUUUAGUUUCUAUGGUCACUUUGGUGGCAGCCAUGAUAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
2
NEP:
0.73%
LE_num:
LEP:
0.73%
ME_num:
MEP:
60.58%
HE_num:
HEP:
37.96%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.79
Avg Expression:
53.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 1.11780426386432 | 2.30662784246318e-06 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -3.06365186264232 | 0.0373467833404958 |
| 3 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -2.0856187704071 | 0.0288207112115142 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.34942312789058 | 1.00823162464518e-05 |
| 5 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.09780862625617 | 0.00115911050204123 |
| 6 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.50336136308119 | 6.35566926878793e-08 |
| 7 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.27200469909362 | 0.00352437957698962 |
| 8 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.14987672316981 | 2.68633721349479e-05 |