RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR482	PmiREN	Chr4	21654404	21654425	-	Y/Y
Osa-miR812ai	PmiREN	Chr12	24677388	24677411	+	Y/N
Osa-miRN2299	PmiREN	Chr12	21011265	21011285	-	N/Y
Osa-miRN2336	PmiREN	Chr12	16207990	16208010	+	N/Y
Osa-miRN2334	PmiREN	Chr10	3705965	3705985	+	N/N
Osa-miR812ar	PmiREN	Chr10	19333224	19333243	+	Y/N
Osa-miRN2173	PmiREN	Chr7	16257970	16257990	+	N/N
Osa-miR531e	PmiREN	Chr5	8564911	8564932	-	Y/N
Osa-miR812ap	PmiREN	Chr7	16750018	16750039	-	Y/N
Osa-miR812aq	PmiREN	Chr1	27167165	27167186	+	Y/N
Osa-miR1430	PmiREN	Chr12	6825111	6825133	-	Y/N
Osa-miR1432	PmiREN	Chr7	23401783	23401804	-	Y/Y
Osa-miR5837	PmiREN	Chr11	24702182	24702202	-	N/N
Osa-miRN2260b	PmiREN	Chr6	27970697	27970717	-	N/Y
Osa-miR5831	PmiREN	Chr5	28577938	28577960	+	Y/N
Osa-miR5809b	PmiREN	Chr4	23527612	23527633	-	N/N
Osa-miR5537a	PmiREN	Chr10	11112761	11112782	+	N/N
Osa-miR5537b	PmiREN	Chr11	19389088	19389109	+	N/N
Osa-miR5537c	PmiREN	Chr6	3109261	3109282	-	N/N
Osa-miRN2276b	PmiREN	Chr2	23015418	23015438	-	Y/N
Osa-miRN2276c	PmiREN	Chr4	34592807	34592827	-	Y/N
Osa-miRN2276a	PmiREN	Chr11	149510	149530	-	Y/N
Osa-miRN2285b	PmiREN	Chr10	3019375	3019394	-	Y/Y
Osa-miR11339j	PmiREN	Chr3	11025951	11025972	-	N/N
Osa-miRN2285c	PmiREN	Chr11	21857897	21857916	+	Y/Y
Osa-miR11339i	PmiREN	Chr12	22138563	22138586	+	N/N
Osa-miR821	PmiREN	Chr8	19925167	19925189	-	N/N
Osa-miR530	PmiREN	Chr4	8303664	8303684	-	Y/Y
Osa-miRN2237a	PmiREN	Chr4	9137284	9137303	-	Y/N
Osa-miRN2237c	PmiREN	Chr8	22325694	22325715	+	Y/N
Osa-miRN2237b	PmiREN	Chr10	10807210	10807231	-	Y/N
Osa-miRN2294	PmiREN	Chr9	9174506	9174526	+	N/Y
Osa-miRN2291	PmiREN	Chr9	8969545	8969565	+	Y/Y
Osa-miRN2290	PmiREN	Chr8	10061176	10061196	-	N/Y
Osa-miRN2205	PmiREN	Chr5	3877018	3877038	+	Y/N
Osa-miRN2292	PmiREN	Chr11	9840141	9840161	+	N/N
Osa-miR9777	PmiREN	Chr2	1797977	1797998	-	Y/N
Osa-miRN2369	PmiREN	Chr12	14944232	14944252	+	N/Y
Osa-miRN2368	PmiREN	Chr11	23042124	23042144	-	N/N
Osa-miRN2365	PmiREN	Chr7	6687478	6687498	+	N/N
Osa-miRN2367	PmiREN	Chr7	5730366	5730386	+	N/N
Osa-miRN2366	PmiREN	Chr7	15967943	15967963	-	N/Y
Osa-miRN2361	PmiREN	Chr4	12965130	12965150	+	N/N
Osa-miRN2360	PmiREN	Chr4	17717355	17717375	+	N/N
Osa-miRN2363	PmiREN	Chr6	24709936	24709956	+	N/Y
Osa-miRN2362	PmiREN	Chr5	24797708	24797728	+	Y/N
Osa-miRN2285d	PmiREN	Chr11	6974869	6974888	-	Y/Y
Osa-miRN2285e	PmiREN	Chr4	598059	598078	+	Y/Y
Osa-miRN2285f	PmiREN	Chr6	23376294	23376313	-	Y/Y
Osa-miRN2285a	PmiREN	Chr10	17481035	17481054	+	Y/Y
Osa-miR5536	PmiREN	Chr2	19457533	19457553	+	N/N
Osa-miRN2228a	PmiREN	Chr4	4926830	4926850	-	N/Y
Osa-miRN2281a	PmiREN	Chr4	16545760	16545780	+	Y/N
Osa-miRN2229b	PmiREN	Chr8	26953695	26953715	-	Y/Y
Osa-miRN2229c	PmiREN	Chr8	705385	705405	+	Y/Y
Osa-miRN2229a	PmiREN	Chr5	7377922	7377942	-	Y/Y
Osa-miRN2281b	PmiREN	Chr8	3513112	3513132	+	Y/N
Osa-miRN2318	PmiREN	Chr12	7555497	7555517	+	N/N
Osa-miRN01	RiceNCexp	Chr1	2068759	2068778	-	N/N
Osa-miRN02	RiceNCexp	Chr1	2309154	2309173	-	Y/N
Osa-miRN03	RiceNCexp	Chr1	2309230	2309250	-	Y/Y
Osa-miRN04	RiceNCexp	Chr1	4766346	4766366	-	Y/N
Osa-miRN05	RiceNCexp	Chr1	4766347	4766367	-	Y/N
Osa-miRN06	RiceNCexp	Chr1	4766354	4766373	-	N/N
Osa-miRN07	RiceNCexp	Chr1	4766362	4766382	-	N/N
Osa-miRN08	RiceNCexp	Chr1	4766513	4766533	-	N/N
Osa-miRN09	RiceNCexp	Chr1	11666844	11666864	-	Y/Y
Osa-miRN10	RiceNCexp	Chr1	11667021	11667041	-	N/N
Osa-miRN11	RiceNCexp	Chr1	11667043	11667064	-	N/N
Osa-miRN12	RiceNCexp	Chr1	11667044	11667064	-	N/N
Osa-miRN13	RiceNCexp	Chr1	12301814	12301833	+	Y/N
Osa-miRN14	RiceNCexp	Chr1	14130486	14130507	+	N/N
Osa-miRN15	RiceNCexp	Chr1	18049428	18049448	+	N/N
Osa-miRN16	RiceNCexp	Chr1	22524220	22524239	-	Y/N
Osa-miRN17	RiceNCexp	Chr1	39048236	39048255	+	N/N
Osa-miRN18	RiceNCexp	Chr1	41260752	41260771	-	Y/N
Osa-miRN19	RiceNCexp	Chr2	4345573	4345594	+	N/N
Osa-miRN20	RiceNCexp	Chr2	18307627	18307646	-	N/N
Osa-miRN21	RiceNCexp	Chr2	18942099	18942118	-	N/N
Osa-miRN22	RiceNCexp	Chr2	24120061	24120081	-	Y/Y
Osa-miRN23	RiceNCexp	Chr2	25135004	25135024	-	Y/N
Osa-miRN24	RiceNCexp	Chr2	27148168	27148188	+	Y/N
Osa-miRN25	RiceNCexp	Chr2	31205965	31205984	-	Y/Y
Osa-miRN26	RiceNCexp	Chr2	34280395	34280414	+	Y/Y
Osa-miRN27	RiceNCexp	Chr3	22088085	22088104	-	N/N
Osa-miRN28	RiceNCexp	Chr3	25574715	25574736	+	N/N
Osa-miRN29	RiceNCexp	Chr3	31059086	31059106	-	N/Y
Osa-miRN30	RiceNCexp	Chr3	32454996	32455015	+	Y/N
Osa-miRN31	RiceNCexp	Chr3	33130637	33130656	+	N/Y
Osa-miRN32	RiceNCexp	Chr4	19420175	19420194	+	Y/N
Osa-miRN33	RiceNCexp	Chr4	25026401	25026420	-	Y/Y
Osa-miRN34	RiceNCexp	Chr4	26976691	26976711	-	N/N
Osa-miRN35	RiceNCexp	Chr4	27823597	27823617	-	N/N
Osa-miRN36	RiceNCexp	Chr4	29042291	29042310	+	Y/N
Osa-miRN37	RiceNCexp	Chr4	33303616	33303635	+	Y/N
Osa-miRN38	RiceNCexp	Chr4	34236111	34236130	-	Y/N
Osa-miRN39	RiceNCexp	Chr5	5230736	5230756	+	Y/Y
Osa-miRN40	RiceNCexp	Chr5	26311266	26311287	+	N/N
Osa-miRN41	RiceNCexp	Chr6	673536	673555	-	N/N
Osa-miRN42	RiceNCexp	Chr6	17877817	17877837	-	N/N
Osa-miRN43	RiceNCexp	Chr6	26554835	26554856	+	Y/Y
Osa-miRN44	RiceNCexp	Chr7	2216843	2216862	-	Y/N
Osa-miRN45	RiceNCexp	Chr8	1707574	1707594	+	Y/N
Osa-miRN46	RiceNCexp	Chr8	23072750	23072771	+	N/N
Osa-miRN47	RiceNCexp	Chr8	23072797	23072818	-	N/N
Osa-miRN48	RiceNCexp	Chr8	26807360	26807381	+	Y/Y
Osa-miRN49	RiceNCexp	Chr8	26814007	26814027	+	Y/N
Osa-miRN50	RiceNCexp	Chr8	26817569	26817589	+	Y/N
Osa-miRN51	RiceNCexp	Chr9	3969825	3969845	+	N/N
Osa-miRN52	RiceNCexp	Chr9	8126542	8126561	-	N/Y
Osa-miRN53	RiceNCexp	Chr9	13552789	13552809	+	N/N
Osa-miRN54	RiceNCexp	Chr9	18289181	18289201	-	N/N
Osa-miRN55	RiceNCexp	Chr9	19647846	19647866	-	N/N
Osa-miRN56	RiceNCexp	Chr9	19792262	19792282	+	Y/Y
Osa-miRN57	RiceNCexp	Chr10	10505987	10506007	+	N/N
Osa-miRN58	RiceNCexp	Chr10	14483304	14483324	-	Y/Y
Osa-miRN59	RiceNCexp	Chr10	21237417	21237438	+	Y/N
Osa-miRN60	RiceNCexp	Chr11	2191306	2191325	+	Y/N
Osa-miRN61	RiceNCexp	Chr11	7807330	7807350	+	N/Y
Osa-miRN62	RiceNCexp	Chr11	7810505	7810525	+	N/N
Osa-miRN63	RiceNCexp	Chr11	8963236	8963256	+	N/N
Osa-miRN64	RiceNCexp	Chr11	11916678	11916698	+	N/N
Osa-miRN65	RiceNCexp	Chr11	19480163	19480184	+	Y/Y
Osa-miRN66	RiceNCexp	Chr11	19480234	19480253	+	N/Y
Osa-miRN67	RiceNCexp	Chr12	1970855	1970876	+	N/N
Osa-miRN68	RiceNCexp	Chr12	3611887	3611908	+	N/N
Osa-miRN69	RiceNCexp	Chr12	8866347	8866367	+	Y/N
Osa-miRN70	RiceNCexp	Chr12	9499637	9499656	-	N/N
Osa-miRN71	RiceNCexp	Chr12	18329479	18329500	+	Y/N