Chr:
Chr5
Start:
5230736
End:
5230756
Strand:
+
Sequence:
GCUCACUUCUCUUUCUGUCAG
Length:
21
precursor sequence:
GACAGAAGAGAGUGAGCAUAUAUAGUUCUUUCCUUGCAUAUGUGGUCAUAUGUGUGUUGACUGAAGAGAUACAUAUAUAUAGAGAGAGAGAGUUCAUGUGCUUGAAGCUAUAUGUGCUCACUUCUCUUUCUGUCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
116
NEP:
42.34%
LE_num:
LEP:
20.07%
ME_num:
MEP:
35.77%
HE_num:
HEP:
1.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
10.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 2.98653355485562 | 0.000266767606621844 |