RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN65_RiceNCexp

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

19480163

End:

19480184

Strand:

+

Sequence:

UCUCUCUCUCCCUUGAAGGCUA

Length:

22

precursor sequence:

UCUCUCUCUCCCUUGAAGGCUAUCUCAUGGAGGUUUGAUGUACACCAUUGUUGCCUAAGAAACUGAGAAAGCCUUCGGGGGAGGAGAGAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

52

NEP:

18.98%

LE_num:

71

LEP:

25.91%

ME_num:

124

MEP:

45.26%

HE_num:

27

HEP:

9.85%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

1.00

Avg Expression:

558.93

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h-3.18573056861590.00525112759041918