Chr:
Chr9
Start:
19792262
End:
19792282
Strand:
+
Sequence:
GGCAGUCUCCUUGGCUAGUCU
Length:
21
precursor sequence:
AUAGCCAAGGAUGACUUGCCUGUGGCCUCUUGGAGAGAGAGGUGUAGCUUAAUUAGCAGCAUGGUUUGAGCAUUGCUUGAUCGGUUGAUCGCUUCGCUUGCUCUGCAUGAGAUCUUACAGGCAGUCUCCUUGGCUAGUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
53
NEP:
19.34%
LE_num:
LEP:
12.41%
ME_num:
MEP:
44.89%
HE_num:
HEP:
23.36%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.99
Avg Expression:
872.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.27884545486241 | 3.82904864838249e-15 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -3.91725134013769 | 7.59478250920013e-13 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4.51148239042503 | 3.37543756631124e-05 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.43202838463757 | 1.17877715622448e-22 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.83061849254401 | 5.58222051175949e-23 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.31944476798552 | 1.13065548516264e-07 |