RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR5340	miRbase		Chr2	5683388	5683410	-	Y/N
osa-miR5484	miRbase		Chr2	7796932	7796952	-	Y/N
osa-miR5485	miRbase		Chr3	22088162	22088182	-	N/N
Osa-miR5486	miRbase/PmiREN	/	Chr3	26838901	26838921	+	Y/N
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
Osa-miR5491	miRbase/PmiREN	/	Chr9	6896428	6896448	+	N/N
Osa-miR5492	miRbase/PmiREN	/	Chr6	16973826	16973846	+	N/N
osa-miR5493	miRbase		Chr2	22898270	22898290	+	Y/N
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y
Osa-miR5495	miRbase/PmiREN	/	Chr2	20298341	20298363	+	N/N
Osa-miR5496	miRbase/PmiREN	/	Chr2	22859779	22859799	-	N/Y
Osa-miR5497	miRbase/PmiREN	/	Chr3	32506021	32506043	+	N/Y
osa-miR5498	miRbase		Chr4	11830808	11830828	-	N/N
Osa-miR5499	miRbase/PmiREN	/	Chr4	17241810	17241832	+	N/N
osa-miR5500	miRbase		Chr4	27731077	27731098	+	N/N
osa-miR5501	miRbase		Chr4	28838215	28838235	+	N/N
osa-miR5502	miRbase		Chr5	28979946	28979967	-	N/N
Osa-miR5503	miRbase/PmiREN	/	Chr12	5657913	5657934	+	N/N
osa-miR5504	miRbase		Chr10	17228177	17228197	-	Y/N
Osa-miR5505	miRbase/PmiREN	/	Chr12	13389180	13389203	+	N/N
osa-miR5506	miRbase		Chr12	15164817	15164837	-	N/Y
osa-miR5507	miRbase		Chr12	21019888	21019908	-	N/Y
Osa-miR5508	miRbase/PmiREN	/	Chr6	638325	638345	-	Y/N
osa-miR5509	miRbase		Chr11	24258785	24258805	-	Y/Y
osa-miR5510	miRbase		Chr12	19128008	19128028	-	N/N
osa-miR5511	miRbase		Chr4	14653021	14653041	-	N/Y
osa-miR5512a	miRbase		Chr4	18387082	18387102	+	Y/N
Osa-miR5513	miRbase/PmiREN	/	Chr3	34008118	34008138	+	Y/N
osa-miR2275c	miRbase		Chr7	16719848	16719870	-	Y/Y
osa-miR5514	miRbase		Chr2	22840171	22840191	+	N/Y
osa-miR5515	miRbase		Chr4	17244231	17244251	+	Y/Y
Osa-miR5516a	miRbase/PmiREN	/	Chr5	13979428	13979448	-	N/Y
Osa-miR5517	miRbase/PmiREN	/	Chr6	24618693	24618715	-	N/N
osa-miR5518	miRbase		Chr7	9526436	9526456	+	N/N
Osa-miR5519	miRbase/PmiREN	/	Chr12	24358362	24358384	+	N/Y
osa-miR5521	miRbase		Chr1	2334230	2334250	-	N/Y
osa-miR5522	miRbase		Chr4	21650334	21650354	+	N/N
osa-miR5523	miRbase		Chr4	18205684	18205705	-	Y/N
osa-miR2275d	miRbase		Chr8	3736826	3736847	-	Y/Y
osa-miR5524	miRbase		Chr9	3278307	3278327	+	N/N
osa-miR5525	miRbase		Chr9	3904488	3904509	-	Y/N
osa-miR5526	miRbase		Chr10	1584957	1584977	+	N/N
Osa-miR5527	miRbase/PmiREN	/	Chr11	9589970	9589990	+	N/Y
osa-miR5528	miRbase		Chr11	9586997	9587017	-	N/N
osa-miR5529	miRbase		Chr11	24804937	24804957	-	N/Y
osa-miR5530	miRbase		Chr12	21782338	21782358	+	N/Y
osa-miR5531	miRbase		Chr3	10288543	10288564	+	N/N
osa-miR5532	miRbase		Chr4	23647976	23647997	+	N/N
osa-miR5533	miRbase		Chr4	2761849	2761869	-	N/N
osa-miR5534a	miRbase		Chr11	6404363	6404383	-	N/N
osa-miR5534b	miRbase		Chr11	6404490	6404510	-	N/N
osa-miR5535	miRbase		Chr12	12446271	12446292	-	N/N
osa-miR5536	miRbase		Chr9	9140172	9140193	-	Y/N
osa-miR5537	miRbase		Chr10	11112761	11112782	+	N/N
osa-miR5538	miRbase		Chr10	21337293	21337314	+	Y/N
osa-miR5539a	miRbase		Chr12	20548938	20548959	-	N/N
osa-miR5540	miRbase		Chr1	35552738	35552758	-	N/N
Osa-miR5541	miRbase/PmiREN	/	Chr2	10239116	10239136	-	N/N
Osa-miR5542	miRbase/PmiREN	/	Chr4	32797727	32797747	-	N/N
osa-miR5543	miRbase		Chr4	16417319	16417339	-	N/N
osa-miR5544	miRbase		Chr2	19335011	19335032	+	N/N
osa-miR5788	miRbase		Chr3	30006963	30006983	+	Y/N
Osa-miR812p	miRbase/PmiREN	/	Chr8	25426161	25426184	+	Y/N
osa-miR812q	miRbase		Chr10	18223589	18223612	+	Y/N
Osa-miR5789	miRbase/PmiREN	/	Chr6	1801939	1801961	-	N/N
osa-miR5790	miRbase		Chr11	7740111	7740134	-	N/N
osa-miR5791	miRbase		Chr12	24374520	24374540	+	N/Y
osa-miR5792	miRbase		Chr10	11842888	11842911	+	Y/Y
osa-miR5793	miRbase		Chr11	24289002	24289022	+	Y/Y
osa-miR5794	miRbase		none	none	none	none	Y/Y
osa-miR812r	miRbase		Chr11	18809925	18809948	+	Y/N
osa-miR5795	miRbase		Chr9	11103946	11103967	-	Y/N
osa-miR5796	miRbase		Chr8	2672531	2672551	-	N/Y
osa-miR5797	miRbase		Chr8	17084777	17084797	+	N/Y
osa-miR5798	miRbase		Chr7	6672130	6672150	-	N/Y
osa-miR812s	miRbase		Chr3	6033241	6033264	-	Y/N
osa-miR5799	miRbase		Chr6	10732173	10732196	+	N/N
Osa-miR5800	miRbase/PmiREN	/	Chr11	24921150	24921170	-	N/Y
Osa-miR5801a	miRbase/PmiREN	/	Chr12	19318259	19318284	-	N/N
Osa-miR5802	miRbase/PmiREN	/	Chr1	13088732	13088757	+	Y/N
osa-miR812t	miRbase		Chr6	17370237	17370260	-	Y/N
osa-miR812u	miRbase		Chr11	8663591	8663614	-	Y/Y
osa-miR5803	miRbase		Chr4	30231544	30231567	+	Y/N
Osa-miR5804	miRbase/PmiREN	/	Chr4	20810170	20810190	-	Y/N
osa-miR5805	miRbase		Chr12	13821863	13821886	-	Y/N
osa-miR5806	miRbase		Chr6	24708676	24708696	+	Y/Y
Osa-miR812v	miRbase/PmiREN	/	Chr5	18432845	18432870	-	N/N
osa-miR5807	miRbase		Chr8	3597816	3597839	-	N/N
osa-miR5801b	miRbase		Chr9	18739256	18739279	+	Y/N
osa-miR5809	miRbase		Chr4	23527612	23527631	-	N/N
osa-miR5810	miRbase		Chr12	7333302	7333325	-	N/N
osa-miR5811	miRbase		Chr3	13198037	13198060	-	N/N
Osa-miR5812	miRbase/PmiREN	/	Chr1	11846176	11846201	-	Y/N
Osa-miR5813	miRbase/PmiREN	/	Chr4	9953000	9953021	-	N/N
Osa-miR5814	miRbase/PmiREN	/	Chr6	26661423	26661446	-	Y/N
osa-miR5815	miRbase		Chr1	25017383	25017406	-	Y/N
osa-miR5816	miRbase		Chr9	11584062	11584085	-	Y/N
osa-miR5143b	miRbase		Chr1	8415818	8415841	-	Y/N
osa-miR5817	miRbase		Chr1	5990135	5990158	+	N/N
osa-miR5818	miRbase		Chr4	13157349	13157369	+	N/Y
osa-miR5819	miRbase		Chr1	29695852	29695872	+	N/N
osa-miR5820	miRbase		Chr10	13982658	13982678	+	N/Y
osa-miR5821	miRbase		Chr12	24605434	24605454	+	N/N
osa-miR5822	miRbase		Chr11	26335946	26335966	+	N/N
Osa-miR5823	miRbase/PmiREN	/	Chr11	21506687	21506712	-	N/N
osa-miR5824	miRbase		Chr1	1761540	1761563	-	Y/N
osa-miR1319b	miRbase		Chr3	23399924	23399947	+	N/N
Osa-miR5825	miRbase/PmiREN	/	Chr5	23591566	23591591	-	Y/N
osa-miR5826	miRbase		Chr11	12859207	12859230	+	N/N
Osa-miR5827	miRbase/PmiREN	/	Chr4	30082047	30082067	-	N/N
Osa-miR5828	miRbase/PmiREN	/	Chr6	16015701	16015721	+	N/N
osa-miR5829	miRbase		Chr6	20149377	20149400	+	N/N
osa-miR5830	miRbase		Chr1	4352598	4352621	-	Y/N
osa-miR5831	miRbase		Chr5	28577946	28577969	+	Y/N
Osa-miR5179	miRbase/PmiREN	/	Chr2	12450920	12450940	+	Y/N
osa-miR5832	miRbase		Chr12	21169058	21169078	+	N/N
Osa-miR5833	miRbase/PmiREN	/	Chr5	9382713	9382735	+	N/N
Osa-miR5834	miRbase/PmiREN	/	Chr6	4758671	4758691	-	N/N
Osa-miR5835	miRbase/PmiREN	/	Chr6	19306937	19306962	-	N/N
osa-miR2873c	miRbase		Chr7	27503533	27503553	+	N/N
osa-miR5836	miRbase		Chr6	17701925	17701945	-	N/Y
osa-miR5837.2	miRbase		Chr11	24702182	24702202	-	N/N
osa-miR5837.1	miRbase		Chr11	24702161	24702181	-	N/Y
Osa-miR5516b	miRbase/PmiREN	/	Chr5	13962669	13962689	-	N/Y
osa-miR6245	miRbase		Chr2	16647884	16647904	+	N/N
osa-miR1440b	miRbase		Chr9	5980663	5980683	+	N/N
osa-miR6246	miRbase		Chr3	1625448	1625470	+	Y/N
Osa-miR6247	miRbase/PmiREN	/	Chr7	19977427	19977449	-	N/N
osa-miR6248	miRbase		Chr3	32572995	32573015	-	Y/N
osa-miR5337b	miRbase		Chr3	35885491	35885511	-	N/N
osa-miR6249a	miRbase		Chr3	744670	744690	-	Y/N
osa-miR5512b	miRbase		Chr4	18386989	18387009	-	Y/N
osa-miR6250	miRbase		Chr6	28264709	28264730	+	N/N
Osa-miR6251	miRbase/PmiREN	/	Chr9	15792347	15792367	+	N/N
osa-miR6252	miRbase		Chr12	18110554	18110576	-	N/N
osa-miR6253	miRbase		Chr7	25019061	25019082	-	N/N