Chr:
Chr3
Start:
6033241
End:
6033264
Strand:
-
Sequence:
AAGACGGACAAUCAAACGUUGGAC
Length:
24
precursor sequence:
UGGGUUUUCGUGUACAACAUGAUCGUUCGUCUUAUUUGAAAAUUUUAUGAAAAAAUUAAAAAAAUCACACAUAAAGUACUAUUCAUAUUUUAUCAUCCAAUAAUAAUAAAAAUACUAAUCACAAAAGAAUUUUUAAUAAGACGGACAAUCAAACGUUGGACACAGAAAUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
12
NEP:
4.38%
LE_num:
LEP:
8.03%
ME_num:
MEP:
85.77%
HE_num:
HEP:
1.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.54
Avg Expression:
3.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -2.24947024354986 | 0.0311529703923231 |
2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -2.91260700616401 | 6.16852390089784e-11 |