RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR5825_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

23591566

End:

23591591

Strand:

-

Sequence:

AAAACAUCUGAUAACCUGAAACGG

Length:

24

precursor sequence:

GUGCUCCCUACGUUUUAAGGUUAUAUGACGUUUUAACUUUGGUUAAAACCAAACUACUUCAAAUUUAACUUAGUUUAUAUACCAAAUUAGUUUUAUGAAAUCAAUAGCUGAAUAUAUUUUUAUAAUAAAUUUAUGUUGAGUUGAAAAUAUUAUUAUUGUUUUCUACAAACUUGAAUUAGUUUGAUUUUGACCAAAAUCAAAACAUCUGAUAACCUGAAACGGGUCGGUCCAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

81

NEP:

29.56%

LE_num:

72

LEP:

26.28%

ME_num:

95

MEP:

34.67%

HE_num:

26

HEP:

9.49%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.81

Avg Expression:

6.78

Tip: Osa-miR5825_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-2.987083041698650.0330369503318446