RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR5505_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

13389180

End:

13389203

Strand:

+

Sequence:

GAGGAUUCGGUAUUGAUCGCUA

Length:

22

precursor sequence:

CAUUGGCACUAUGGCGCAUGUAUGUUGAGUUCUUGAAGCAUUGCCGAUAUCGAUAUAUAUUUCUUUGCAUGGGACAGUAGCCUUUUCUGCGGCGGAUCGUUUCCUUUUCUCCAAUCAUAAAUAACCUGAUCUCUUUCUUUGUCUUUCAUCAAAUAAGUACAAGAAUUGCAUAGAUGAGGAUUCGGUAUUGAUCGCUAAAAUGCGAGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

107

NEP:

39.05%

LE_num:

87

LEP:

31.75%

ME_num:

80

MEP:

29.2%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

ovary

Tau :

0.74

Avg Expression:

1.01

Tip: Osa-miR5505_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miR5505_Both is not a differential expression ncRNA.