RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR812q_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

18223589

End:

18223612

Strand:

+

Sequence:

ACGUUGGGUACGAAUAUCUACGGC

Length:

24

precursor sequence:

UACUCCAUCCGUCUCAAAAUAAGUGCAGUUUUGCACUAUUCAUACUUAACAUUUGAACGUUCGUCUUAUUUGAAAAUUUUUUAUGAUUAGUAUUUUUAUUGCUAUUAGAUGUUAAAACAUAAAUAGUACUUUAUGUGUGACUAAAUAUUUUCAAUUUUUUCACAAAAUUUUCAAAUAAGACGGACAGUCAAACGUUGGGUACGAAUAUCUACGGCUGCACUUAUUUUGGGACGGAGGUAGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

96

NEP:

35.04%

LE_num:

42

LEP:

15.33%

ME_num:

134

MEP:

48.91%

HE_num:

2

HEP:

0.73%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.65

Avg Expression:

1.95

Tip: osa-miR812q_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-3.494273977943770.000280849262416384