Chr:
Chr11
Start:
18809925
End:
18809948
Strand:
+
Sequence:
ACGUUAGACACGAAUUUCUACGGC
Length:
24
precursor sequence:
CCUAAAAUAAGUAUAGUUUUGCACUGUUCAUGUCUAACGUUUGACCGUUCGUCUUAUUUGAAAAUUUUUUAUGAUUAAUAUUUUUGUUGUUAUUAGAUAAUAAAACAUGAAUAGUAUUUUAUGUGUGACUAACUUUUUUUAAUUUUCUUAUAAAUUUUUUAAAUAAGACGGACGGUCAAACGUUAGACACGAAUUUCUACGGCUGCACUUAUUUUAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
100
NEP:
36.5%
LE_num:
LEP:
10.95%
ME_num:
MEP:
51.09%
HE_num:
HEP:
1.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.86
Avg Expression:
8.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.63966892172056 | 0.000650707171740446 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -2.37425376855813 | 0.00589032683196512 |
| 3 | zhonghua11 // panicle // wild-type--/--zhonghua11 // panicle // rdr701-1 mutant | -1.47897768565748 | 0.0335843886197049 |