| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 1.93 | MC |
| SRR8258050 | leaf_sheath | R_bph | 9.51 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 3.10 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 2.22 | MC |
| SRR7058097 | leaf | rice_mock | 2.00 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.30 | MC |
| SRR7058098 | leaf | rice_RSV | 2.27 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.28 | MC |
| SRR2154074 | seed | Nipponbare_seed | 1.65 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 3.23 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 3.68 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.70 | MC |
| SRR447128 | root | As(III) 20 uM | 0.34 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 0.42 | MC |
| SRR504363 | leaf | 93-11 X NPB | 19.05 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 0.21 | MC |
| SRR9070101 | shoot_base | WT_base | 0.86 | MC |
| SRR089619 | panicle | control | 2.79 | MC |
| SRR447135 | shoot | As(III) 20 uM | 0.72 | MC |
| SRR447134 | shoot | As(III) 80 uM | 1.20 | MC |
| SRR447131 | root | As(III) 80 uM | 0.68 | MC |
| SRR447130 | root | As(III) 20 uM | 0.52 | MC |
| SRR1849767 | leaf | Control 30min | 2.71 | MC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 1.28 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 2.41 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 2.66 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 2.85 | MC |
| SRR6498701 | leaf | "WT, Control" | 2.71 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1.97 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 4.16 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 2.37 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 0.58 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 0.34 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 0.34 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 0.64 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.24 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 0.57 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 1.24 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 0.50 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 0.83 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 1.44 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 4.26 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.52 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.48 | MC |
| SRR447129 | root | As(III) 80 uM | 0.48 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1.59 | MC |
| SRR1849772 | leaf | Control 120min | 1.83 | MC |
| SRR1849771 | leaf | Control 120min | 1.48 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 3.17 | MC |
| SRR7058096 | leaf | rice_mock | 2.63 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 10.26 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.39 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.91 | MC |
| SRR447136 | shoot | As(III) 80 uM | 0.78 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.71 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.52 | MC |
| SRR2154075 | seed | Taipei309_seed | 2.00 | MC |
| SRR976171 | lamina_joint | wild type | 13.03 | MC |
| SRR4098208 | root | No treatment | 3.32 | MC |
| SRR4098209 | leaf | No treatment | 5.49 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.54 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.57 | MC |
| SRR9070100 | shoot_base | WT_base | 0.42 | MC |
| SRR4098205 | seedling | Heat (50C) | 4.01 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.63 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.54 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.49 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.45 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.20 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.36 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 0.28 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.12 | MC |
| SRR2862364 | leaf | mock leaf cells | 1.48 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 1.98 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 6.72 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 9.70 | MC |
| SRR8649147 | panicle | panicle tissue | 0.40 | MC |
| SRR4098207 | panicle | No treatment | 1.49 | MC |
| SRR10704059 | leaf | Glyphosate | 0.36 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.32 | MC |
| SRR9070102 | shoot_base | WT_base | 0.55 | MC |
| SRR6498699 | leaf | "WT, Control" | 2.82 | MC |
| SRR2154079 | seedling | Heukgyeong_seedling | 14.61 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.40 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.62 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 0.42 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 0.30 | MC |
| SRR4098203 | seedling | No treatment | 10.45 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 0.28 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.33 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.65 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.45 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 3.08 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 0.15 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 1.63 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 2.68 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.30 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 5.10 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 3.25 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.16 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 0.74 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.34 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 0.88 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 0.38 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 0.24 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 0.79 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.65 | MC |
| SRR3110556 | shoot | shoot control | 7.93 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 1.46 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 4.42 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.47 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 3.41 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.71 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 0.80 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 1.57 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 0.82 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 0.69 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.41 | MC |
| SRR089621 | panicle | cold | 3.41 | MC |
| SRR089620 | panicle | drought | 2.66 | MC |
| SRR089622 | panicle | salt | 1.44 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 0.47 | MC |
| SRR2544786 | embryo | dry seed | 0.47 | MC |
| SRR4098172 | seedling | Cold (4C) | 3.83 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.64 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 1.13 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 4.00 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 0.91 | MC |
| SRR8258048 | leaf_sheath | R_bph | 3.57 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.40 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.46 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 4.15 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 1.20 | MC |
| SRR1654490 | leaf | wild type | 12.38 | MC |
| SRR3110557 | shoot | shoot treated | 7.94 | MC |
| SRR5940086 | panicle | Wild type | 2.21 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 1.15 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 2.16 | MC |
| SRR8258051 | leaf_sheath | R_bph | 5.91 | MC |
| SRR504362 | leaf | NPB X 93-11 | 25.12 | MC |