Chr:
Chr3
Start:
34008118
End:
34008138
Strand:
+
Sequence:
UAACAAAGGACAACAGACUGA
Length:
21
precursor sequence:
UAGGAUAGUCAUUAUUCUUCAGUCCGUUGUCCUUUGUGAUAACAUAUCUGUACUUAUACGUUUGUUCAUUUAGGAUAGACAAGGCUCAAAGCCACGCUAGCUGACAUUAGCCGGAUAUGUUAUAACAAAGGACAACAGACUGAAGAAUAAUGACUAUCCUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
2.92%
ME_num:
MEP:
93.43%
HE_num:
HEP:
0.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.54
Avg Expression:
4.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.43738148374285 | 0.0423399106853431 |
| 2 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.45093385981959 | 0.031063980051226 |