RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR5538_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

21337293

End:

21337314

Strand:

+

Sequence:

ACUGAACUCAAUCACUUGCUGC

Length:

22

precursor sequence:

AUGAGGAACUACUGAACUCAAUCACUUGCUGCCGUUACUCAACAGUUUUCUGUUGAGGUCUAUCCCGUAGAGGUAGUCAAAUUAGAACGGGAGGAGAGGAGGUGAGUAGGGGUAGUUCAAUGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

51

NEP:

18.61%

LE_num:

102

LEP:

37.23%

ME_num:

121

MEP:

44.16%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.71

Avg Expression:

1.14

Tip: osa-miR5538_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1)-1.869825506565990.00394975490691132
2PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2)-8.898260190102891.74615952206423e-07