RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR5824_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

1761540

End:

1761563

Strand:

-

Sequence:

AGUCUGAUAAGAAGUCAAUGGCGU

Length:

24

precursor sequence:

UUAAUAGAUAACGCAAUUGACAUUUUAUCACACGUUUAAUCAUUCAUCUUAUUUAAAAAAUUUACGUAAUUAUAAUCUAUUUUAUUGUGAGUUGUUUUAUCACUUAAAGUAUUUUAUUCGUGAUUCAAAUCUUAUGUAUUUAUAUAAAAUUUUUGAAUAAGAUGAAUAGUCUGAUAAGAAGUCAAUGGCGUUAUCUAUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

127

NEP:

46.35%

LE_num:

99

LEP:

36.13%

ME_num:

48

MEP:

17.52%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.80

Avg Expression:

0.48

Tip: osa-miR5824_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-4.314021327213880.0469127392264795