RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR5488_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

18039140

End:

18039162

Strand:

+

Sequence:

UGAAGGCGACUGAUGAUUUCA

Length:

21

precursor sequence:

ACGCAUUUGAUGAAGGCGACUGAUGAUUUCAGGAGACACAAGAUGACCUUGCGCGUGGUGAUUGGAUUUUUACUGUCAUUUUCUCGCAGAAGGCACAGAUUGGAUCAUUACUCUGAACAGCAUCACAAGCUUGCAAGAAACACAAUCCUUUUAAAUAAACAAAUUUUUUAUCUGUGGAAUCAGAUUAACCAUUAGAUGUUUUCACAGAAGUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

208

NEP:

75.91%

LE_num:

17

LEP:

6.2%

ME_num:

48

MEP:

17.52%

HE_num:

1

HEP:

0.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.97

Avg Expression:

19.20

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miR5488_Both is not a differential expression ncRNA.