RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR5179_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

12450920

End:

12450940

Strand:

+

Sequence:

UUUUGCUCAAGACCGCGCAAC

Length:

21

precursor sequence:

UACAUGAAGUUUGAGAGGCGUUUUGCUCAAGACCGCGCAACGAUUCCAUAUGACACCGCAUCGUUGUCCAUGCCUAUCAUGUUCAUCCAGAGCCCCUGUUGAUCUUCAGAUAAGAGAAAAGCUCAAAAUUAAAGAAGGCUUGUUUAUUGAUCAUGUCAAGGAUAGGUAUCGACGGCGAUGCGCUGGCUAUGGCCAUGGUUGUGCGGUUCUUGCGCAAUAACGUUUUGAUCUCGAUCUCCUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

218

NEP:

79.56%

LE_num:

22

LEP:

8.03%

ME_num:

33

MEP:

12.04%

HE_num:

1

HEP:

0.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.97

Avg Expression:

2.52

Tip: Osa-miR5179_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h3.341828499183610.0244138637578767