Chr:
Chr10
Start:
17228177
End:
17228197
Strand:
-
Sequence:
AGUGACGGGAGGACUGCAAGG
Length:
21
precursor sequence:
AUUGCUGAAUUUUGUUCGUUGGAGCUUGUUCUGUUAUUUUAUUUGCACUGCCGUAGGAAAUACACAGUGACGGGAGGACUGCAAGGUUCUUCAGCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
27
NEP:
9.85%
LE_num:
LEP:
29.2%
ME_num:
MEP:
59.85%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
ovary
Tau :
0.52
Avg Expression:
1.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.92506270893794 | 0.00394975490691132 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.75321543774977 | 0.00383762443250746 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -3.58668311219511 | 1.38957724049418e-06 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -2.36048892035346 | 0.0105321645142713 |
| 5 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 3.6072864468099 | 2.08091175140376e-05 |