Chr:
Chr7
Start:
16719848
End:
16719870
Strand:
-
Sequence:
AGAAUUGGAGGAAAACAAACUGA
Length:
23
precursor sequence:
ACUGGAAGUGAGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGAUGCUUGCAACAGUGUGGCAAACAAUUAAUAUUCAGAUUGUUUUUCUCCAAUAUCUCACCUUCAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
130
NEP:
47.45%
LE_num:
LEP:
22.99%
ME_num:
MEP:
14.96%
HE_num:
HEP:
14.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.96
Avg Expression:
1438.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -4.73364753489767 | 0.000933923767224235 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 5.58293959775644 | 0.00185561840753048 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -5.599305424373 | 0.00140408059716332 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 5.72913722291106 | 0.000322234200072765 |