RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR5530_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

21782338

End:

21782358

Strand:

+

Sequence:

AGUGGUGUCGUAUUACCUGCC

Length:

21

precursor sequence:

ACUGUUGGCGAGUGGUGUCGUAUUACCUGCCCUUAUAGGACAUGAUGCAUCAUGCAUGCAUUAUGGCUGGGAGCAUGAUAUGAUACCUCUAGUAUGUAAACUAAUAAUUAGUAGCAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

206

NEP:

75.18%

LE_num:

12

LEP:

4.38%

ME_num:

49

MEP:

17.88%

HE_num:

7

HEP:

2.55%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.97

Avg Expression:

29.86

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: osa-miR5530_miRbase is not a differential expression ncRNA.