Chr:
Chr1
Start:
8415818
End:
8415841
Strand:
-
Sequence:
UGUGGUAUGUUGGCAAUGUAGGAA
Length:
24
precursor sequence:
UGACUCAUGCUUCCAUGUUGACCAACAUACCACCAAAAUAUUAUGAUGUUCGCAUGUUGCCCUGUUUACCACUAUUAAUCAAGACACUCCCCCUCCUCUCUUUUGUUUUCCUGGUGAACAUCAAUAUAUUGGUAAACAGGCUAAGGUUGUAAUUUUCUGUGGUAUGUUGGCAAUGUAGGAAGUCUGAAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
5.47%
ME_num:
MEP:
87.59%
HE_num:
HEP:
4.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.90
Avg Expression:
21.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.06558281564413 | 0.0197950274744977 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -3.10500046291532 | 0.00118771394199412 |