RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR812v_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

18432845

End:

18432870

Strand:

-

Sequence:

AUGGCUGCACUUAAAAUGGGACGG

Length:

24

precursor sequence:

ACUGCAUCCUCCGUUCCAAUUUUAGUGAAACCAUAAGUUUCCGUGCUUAAUUUUAACUGUUUAUUUUAUUUAAAUUUUUUUUAUAAUUAGUAUUUUUGUUGUUAUGAGAUGAUAAAACAUAAGUAUUACUUUAUGCGUGACUUAUGUUUUUAUUUUUUUUCAAAUAAAAAGGACGAUUAAAGUUAGAUAUAAAAACUCAUGGCUGCACUUAAAAUGGGACGGAGAGAGUACU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

30

NEP:

10.95%

LE_num:

38

LEP:

13.87%

ME_num:

203

MEP:

74.09%

HE_num:

3

HEP:

1.09%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_base

Tau :

0.86

Avg Expression:

7.68

Tip: Osa-miR812v_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miR812v_Both is not a differential expression ncRNA.