RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR6254	miRbase		Chr12	1970872	1970892	+	N/N
osa-miR6255	miRbase		Chr7	25018839	25018860	-	N/N
Osa-miR6256	miRbase/PmiREN	/	Chr3	1235636	1235659	-	N/N
osa-miR818f	miRbase		Chr8	18746593	18746613	-	N/N
osa-miR1437b-5p	miRbase		Chr8	3956058	3956078	-	N/N
osa-miR1437b-3p	miRbase		Chr8	3955932	3955955	-	Y/N
osa-miR7692-5p	miRbase		Chr1	26250210	26250233	+	N/N
osa-miR7692-3p	miRbase		Chr1	26250474	26250497	+	Y/N
osa-miR7693-5p	miRbase		Chr12	25875300	25875323	-	N/N
osa-miR7693-3p	miRbase		Chr12	25875198	25875219	-	Y/N
osa-miR7694-5p	miRbase		Chr10	18864452	18864475	-	N/N
osa-miR7694-3p	miRbase		Chr10	18864382	18864403	-	Y/N
osa-miR7695-5p	miRbase		Chr1	11667043	11667066	-	Y/N
osa-miR7695-3p	miRbase		Chr1	11666852	11666872	-	Y/Y
osa-miR1861o	miRbase		ChrUn	521065	521086	+	Y/N
osa-miR5079b	miRbase		Chr10	10916069	10916090	-	N/N
osa-miR5539b	miRbase		Chr12	20553832	20553853	-	N/N
osa-miR6249b	miRbase		Chr4	30286469	30286489	+	Y/N
osa-miR531c	miRbase		Chr11	26930692	26930715	+	Y/N
osa-miR11336-5p	miRbase		Chr1	35090297	35090320	+	Y/N
osa-miR11336-3p	miRbase		Chr1	35090379	35090403	+	N/N
osa-miR11337-5p	miRbase		Chr2	27593846	27593866	+	N/N
osa-miR11337-3p	miRbase		Chr2	27593919	27593939	+	Y/N
osa-miR11338-5p	miRbase		Chr2	34890514	34890537	+	N/N
osa-miR11338-3p	miRbase		Chr2	34890601	34890624	+	Y/N
osa-miR11339-5p	miRbase		Chr1	10371798	10371818	+	N/N
osa-miR11339-3p	miRbase		Chr1	10371868	10371888	+	N/N
osa-miR11340-5p	miRbase		Chr6	7715047	7715070	+	N/N
osa-miR11340-3p	miRbase		Chr6	7715459	7715482	+	Y/N
osa-miR11341-5p	miRbase		Chr9	22895132	22895155	+	N/N
osa-miR11341-3p	miRbase		Chr9	22895229	22895252	+	Y/N
osa-miR11342-5p	miRbase		Chr11	23289397	23289417	-	Y/N
osa-miR11342-3p	miRbase		Chr11	23289311	23289332	-	N/N
osa-miR11343-5p	miRbase		Chr12	16169144	16169164	-	Y/N
osa-miR11343-3p	miRbase		Chr12	16169071	16169091	-	N/N
osa-miR11344-5p	miRbase		Chr10	21166686	21166707	+	Y/N
osa-miR11344-3p	miRbase		Chr10	21166714	21166734	+	N/N
osa-miR2120b-5p	miRbase		Chr1	1830261	1830280	+	N/N
osa-miR2120b-3p	miRbase		Chr1	1830288	1830307	+	N/N
osa-miR5801c-5p	miRbase		Chr8	20930473	20930493	+	N/N
osa-miR5801c-3p	miRbase		Chr8	20930517	20930537	+	N/N
osa-miR6245b-5p	miRbase		Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase		Chr12	12892477	12892497	-	N/N
Osa-miR397b	PmiREN		Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN		Chr6	28489798	28489818	+	Y/Y
Osa-miRN2228b	PmiREN		Chr8	4435491	4435511	-	N/Y
Osa-miRN2232d	PmiREN		Chr9	6711930	6711950	-	Y/N
Osa-miRN2232e	PmiREN		Chr1	26307378	26307398	+	Y/N
Osa-miRN2232b	PmiREN		Chr6	8837476	8837496	+	Y/N
Osa-miRN2232c	PmiREN		Chr7	24306549	24306569	-	Y/N
Osa-miR11340	PmiREN		Chr6	7715339	7715361	+	N/N
Osa-miR2871	PmiREN		Chr4	8340904	8340924	+	Y/N
Osa-miRN2232j	PmiREN		Chr12	25611723	25611743	+	Y/N
Osa-miR2876	PmiREN		Chr6	17008984	17009005	-	Y/N
Osa-miRN2203b	PmiREN		Chr1	7857738	7857758	+	Y/N
Osa-miRN2203a	PmiREN		Chr1	25180654	25180674	+	Y/N
Osa-miR3979	PmiREN		Chr11	19480162	19480182	+	Y/Y
Osa-miRN2309c	PmiREN		Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN		Chr10	20405654	20405674	-	N/Y
Osa-miRN2309a	PmiREN		Chr7	29070631	29070652	+	Y/N
Osa-miRN2332	PmiREN		Chr9	8961276	8961296	-	N/N
Osa-miRN2354	PmiREN		Chr12	24297192	24297212	+	Y/N
Osa-miRN2355	PmiREN		Chr1	20077203	20077223	+	N/N
Osa-miRN2356	PmiREN		Chr2	20358270	20358290	-	N/N
Osa-miR1846h	PmiREN		Chr2	26544128	26544147	-	Y/N
Osa-miR818b	PmiREN		Chr2	4007276	4007301	+	N/N
Osa-miRN2351	PmiREN		Chr12	24395829	24395849	-	N/Y
Osa-miRN2352	PmiREN		Chr12	18628386	18628406	-	N/N
Osa-miR818a	PmiREN		Chr2	28768227	28768250	+	Y/N
Osa-miR1846g	PmiREN		Chr11	21603039	21603059	-	Y/Y
Osa-miR1846f	PmiREN		Chr10	6857378	6857397	-	Y/N
Osa-miR1846e	PmiREN		Chr9	13211472	13211495	-	Y/N
Osa-miR11337l	PmiREN		Chr4	14006148	14006168	+	N/N
Osa-miR2118l	PmiREN		Chr11	7810747	7810768	-	Y/Y
Osa-miR2118i	PmiREN		Chr11	7810261	7810282	-	Y/N
Osa-miRN2321	PmiREN		Chr2	10642797	10642817	+	N/Y
Osa-miRN2320	PmiREN		Chr1	19145141	19145161	-	N/Y
Osa-miRN2278	PmiREN		Chr2	20259532	20259552	+	Y/Y
Osa-miR3982	PmiREN		Chr11	1384746	1384766	-	Y/Y
Osa-miRN2327	PmiREN		Chr5	6140527	6140547	-	N/Y
Osa-miRN2326	PmiREN		Chr5	13984508	13984528	-	N/Y
Osa-miR11337p	PmiREN		Chr9	15244712	15244732	+	Y/N
Osa-miR11337q	PmiREN		Chr12	4776554	4776575	-	Y/N
Osa-miR11337r	PmiREN		Chr2	6143086	6143107	-	Y/N
Osa-miR11337s	PmiREN		Chr3	31459681	31459702	-	Y/N
Osa-miR11337t	PmiREN		Chr7	2096379	2096400	-	Y/N
Osa-miR5801d	PmiREN		Chr12	1024710	1024729	+	Y/N
Osa-miR5801e	PmiREN		Chr1	18014203	18014222	-	Y/N
Osa-miR5801j	PmiREN		Chr8	20607786	20607806	+	N/N
Osa-miR5801k	PmiREN		Chr5	16046868	16046887	+	Y/N
Osa-miR5801h	PmiREN		Chr6	28888188	28888208	+	N/N
Osa-miR5801i	PmiREN		Chr7	21370921	21370941	+	N/N
Osa-miR5801n	PmiREN		Chr4	21147864	21147884	+	Y/N
Osa-miR1878	PmiREN		Chr9	16555575	16555598	+	Y/N
Osa-miR5801l	PmiREN		Chr8	26861955	26861975	-	Y/N
Osa-miR5801m	PmiREN		Chr3	1824711	1824731	-	N/N
Osa-miR5801r	PmiREN		Chr6	26032953	26032972	+	N/N
Osa-miRN2195a	PmiREN		Chr1	7494658	7494678	+	N/N
Osa-miR5801p	PmiREN		Chr4	6449699	6449720	+	Y/N
Osa-miR5801q	PmiREN		Chr12	8866352	8866371	+	N/N
Osa-miRN2268a	PmiREN		Chr12	22206661	22206681	-	Y/N
Osa-miRN2268b	PmiREN		Chr2	10627710	10627730	+	Y/N
Osa-miRN2373c	PmiREN		Chr8	5571357	5571377	+	N/N
Osa-miR2090	PmiREN		Chr1	38764362	38764387	-	Y/N
Osa-miR2905	PmiREN		Chr1	24415931	24415952	+	Y/N
Osa-miR172b	PmiREN		Chr1	42923746	42923765	-	Y/N
Osa-miRN2219	PmiREN		Chr1	8729125	8729145	+	Y/N
Osa-miR393b	PmiREN		Chr4	34931961	34931981	-	Y/Y
Osa-miRN2335	PmiREN		Chr10	3687409	3687429	-	N/Y
Osa-miR1429	PmiREN		Chr8	2036951	2036974	-	N/N
Osa-miR11343a	PmiREN		Chr12	16169140	16169160	+	Y/N
Osa-miRN2232f	PmiREN		Chr9	5670106	5670126	-	Y/N
Osa-miRN2178a	PmiREN		Chr12	19677360	19677380	+	Y/N
Osa-miR169p	PmiREN		Chr8	7641337	7641357	+	Y/N
Osa-miRN2178c	PmiREN		Chr7	4112681	4112701	-	Y/N
Osa-miRN2178b	PmiREN		Chr12	25472900	25472920	+	Y/N
Osa-miR169f	PmiREN		Chr2	18558462	18558481	-	Y/N
Osa-miR169a	PmiREN		Chr3	35782429	35782449	+	Y/N
Osa-miRN2267b	PmiREN		Chr12	14534590	14534610	+	N/Y
Osa-miRN2283b	PmiREN		Chr11	24938808	24938828	+	Y/N
Osa-miRN2232a	PmiREN		Chr3	27624400	27624420	+	Y/N
Osa-miRN221f	PmiREN		Chr6	1095084	1095103	-	Y/N
Osa-miR3980a	PmiREN		Chr2	24319574	24319596	-	N/N
Osa-miR3980b	PmiREN		Chr2	24319574	24319596	-	N/N
Osa-miRN2325	PmiREN		Chr4	18612501	18612521	+	N/N
Osa-miR529a	PmiREN		Chr2	16227807	16227827	+	Y/N
Osa-miRN221a	PmiREN		Chr12	11288156	11288175	-	Y/N
Osa-miRN2232h	PmiREN		Chr3	24510613	24510633	-	Y/N
Osa-miR11339ad	PmiREN		Chr1	42099895	42099915	+	N/N
Osa-miRN2232i	PmiREN		Chr12	24283404	24283424	-	Y/Y
Osa-miRN2313	PmiREN		Chr12	21182132	21182152	-	N/Y
Osa-miRN2324	PmiREN		Chr4	17663211	17663231	+	N/Y
Osa-miR11339ag	PmiREN		Chr6	23690441	23690461	+	N/N
Osa-miRN2298b	PmiREN		Chr9	11105872	11105892	-	Y/N
Osa-miRN2314	PmiREN		Chr10	13966518	13966538	+	N/Y
Osa-miRN2298a	PmiREN		Chr6	15278119	15278139	-	Y/N
Osa-miRN2260a	PmiREN		Chr1	38771457	38771477	-	Y/N
Osa-miRN2276e	PmiREN		Chr8	13368415	13368435	-	Y/N
Osa-miRN2303b	PmiREN		Chr6	14075614	14075634	+	N/Y