RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR11341-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

22895229

End:

22895252

Strand:

+

Sequence:

AUCUCGUUAGAUUCGUCUCGCAAA

Length:

24

precursor sequence:

UCUUGUUUGGAUCCUCCGGGCUAUUAAAUAGCCCUCCGGAAUCUUGCUAUUUAGGAUUAUUAAACGUAGAUUACCGACAAAACCGAUUCCAUAACCCCUAGGCUAUUUUGCGAGACGAAUCUAAUGAUGUAUAUUAAUCCAUAAUUAGCGGCUGAUUACUGUAGCAUCACUGUAGCAAAUCAUGGAUUAAUAUAUCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGAAGUUAUGGAAUAGGUUUUGUCAGUAAUCUACGUUUAAUACUCUUAAAUAGCAAGAUUCCAAAGGACUGUUAAAUAGCCCUUCGGAUCCAAACAGGGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

33

NEP:

12.04%

LE_num:

67

LEP:

24.45%

ME_num:

174

MEP:

63.5%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_base

Tau :

0.78

Avg Expression:

3.22

Tip: osa-miR11341-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // OE_AGO171.22880247911840.0270392865943997
2japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-2.30451140802052.1940977694639e-10