Chr:
Chr2
Start:
18558462
End:
18558481
Strand:
-
Sequence:
UAGCCAAGGAUGACUUGCCU
Length:
20
precursor sequence:
GAGGACAAGAGCUGAUUCGGUAGCCAAGGAUGACUUGCCUAAUGCCUAUGUGCAUGUGUUUAUACGCUGCUCAUCUGCAUUUUGAUUAUCCCCUGAUCAGUCCUGUCGUCAAUUAUAUGUGUGUGUAGUACUCUGUACUCAUACAUAUAUAGGCAUGUCUUCCUUGGCUAUUCGGAGCGGCUCUUGUCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
43
NEP:
15.69%
LE_num:
LEP:
11.68%
ME_num:
MEP:
62.77%
HE_num:
HEP:
9.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.83
Avg Expression:
20.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 3.58096356523287 | 0.00252260308136845 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -6.26624836401345 | 1.33123793273362e-23 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -5.99788055841068 | 1.42714080935375e-23 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 3.58760284454736 | 2.49405880475748e-07 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 3.29513916819234 | 3.00727164203694e-05 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 3.27000604511623 | 0.000218012975863692 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.08208608019534 | 0.00363844160395722 |
| 8 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.45496192507131 | 0.0150351430065532 |
| 9 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | 2.48507175194278 | 0.0377974208337663 |