Chr:
Chr7
Start:
4112681
End:
4112701
Strand:
-
Sequence:
UUUGGCUUGCAACGUUUGACC
Length:
21
precursor sequence:
CAAUAUAAGGGAUUUUAAGUUUUGGCUUGCAACGUUUGACCACUCGUCUUAUUCAAACUUUUUUUGCAAAUAUAAAAAACGAAAAAUUAUGCUUAAAGUACUGUGAAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAAAAAUUGAAUAAGACGAGUGGUCAAACGUUGCAAGUAAAAACUUAAAAUUCCUUAUACUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
44
NEP:
16.06%
LE_num:
LEP:
10.95%
ME_num:
MEP:
27.37%
HE_num:
HEP:
45.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.75
Avg Expression:
94.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.17790343588639 | 1.03872823135274e-10 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.04447591512623 | 0.0153012389628505 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.30741107212392 | 1.50634099287846e-08 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.53291304654101 | 1.17623459663814e-10 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.44225999436126 | 3.0666978447196e-10 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.19866126188823 | 1.77317906798976e-05 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 10.5465282784383 | 2.18341759791643e-16 |