Chr:
Chr2
Start:
3280864
End:
3280885
Strand:
-
Sequence:
UUGAGUGCAGCGUUGAUGAACC
Length:
22
precursor sequence:
GAAGAGAAGGGAAGGCAUUAUUGAGUGCAGCGUUGAUGAACCUGCCGGCCGGCUAAAUUAAUUAGCAAGAAAGUCUGAAACUGGCUCAAAGGUUCACCAGCACUGCACCCAAUCACGCCUUUGCUCUCUCUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
2
NEP:
0.73%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
17.52%
HE_num:
HEP:
81.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.96
Avg Expression:
18098.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.26327286243296 | 1.43403649007418e-06 |
| 2 | C101LAC // leaves // control 0 hour--/--C101LAC // leaves // 8 hpi;M.oryzae | 1.42366500170944 | 8.52095918628984e-06 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.66773838384034 | 1.01292236455818e-32 |
| 4 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.23476700077387 | 2.22152416087122e-06 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.04177112320179 | 1.48712508895882e-05 |
| 6 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.35432319468262 | 0.0190470827002438 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 1.61752418150108 | 0.00106544900799843 |