RiceNCexp:Browse

Osa-miRN2219_PmiREN

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr1

Start:

8729125

End:

8729145

Strand:

Sequence:

AUCGGAGGCCAUGGUGCAGCC

Length:

precursor sequence:

GCCGGCGGCCUGACAUUGGGAUCGGAGGCCAUGGUGCAGCCAAGGAUGACUUGCCGAUCGAUCGAUCUAUCUAUGAAGCUAAGCUAGCUGGCCAUGGAUCCAUCCAUCAAUUGGCAAGUUGUUCUUGGCUACAUCUUGGCCCCUGCUCCUCAUGUAAGGCCGGCCUGUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

5.47%

LE_num:

LEP:

8.03%

ME_num:

128

MEP:

46.72%

HE_num:

109

HEP:

39.78%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

leaf

Tau :

0.77

Avg Expression:

63.13

Tip: Osa-miRN2219_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h	-2.4487032195201	0.0030854915586905
2	PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2)	-1.46866086688864	1.64706309666816e-07
3	PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1)	1.95671560504092	3.73639147848669e-10
4	PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2)	2.32053399383916	6.98055464645211e-10
5	PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17	-1.19699149777399	0.00672283889413145
6	PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17	-1.73076232594219	0.000152080112478292
7	Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late	6.16294327155591	3.90917144329783e-18
8	Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early	5.80414144582999	1.04906653466142e-15
9	BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late	3.72148219576443	1.40702769082636e-08
10	BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly	3.09931977708438	0.000146408466583249