Chr:
Chr7
Start:
29070631
End:
29070652
Strand:
+
Sequence:
UUCGAGAACCGUAGAAUUACUC
Length:
22
precursor sequence:
AUGAUAAGUAUAUUAUUAGAGCAAUUUUAUCGUUCUUGAGGAGGUACCAUUUUUCUAUUGUAAAUUCGAUACCUCUUUACACCUAAGUACUAUGAGGUACAAUGAGAUACCAAAUUUUACAUUAAAUUUUUGGUACCUCUUCGAGAACCGUAGAAUUACUCAUAUUAUUAUGUAGGUGUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
148
NEP:
54.01%
LE_num:
LEP:
19.71%
ME_num:
MEP:
18.25%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.95
Avg Expression:
8.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 5.64502461336956 | 0.000939258329705122 |