Chr:
Chr2
Start:
20259532
End:
20259552
Strand:
+
Sequence:
ACAGGACAAGCUAAUGGGGCU
Length:
21
precursor sequence:
CAGAGUAUCCCUUUCUACACACAGGACAAGCUAAUGGGGCUUAACUUUUCUUGGCCGUGCACAACAACGACGAGAGCGUAUAAUAACAAGAUCGACGACACCUCUCUAGGAUGCUUCGACAUCCAAGGCUUCUUGGCUCUCCGGUCCGUGCUGCGAUCCUCAUCAGCUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
189
NEP:
68.98%
LE_num:
LEP:
3.65%
ME_num:
MEP:
6.57%
HE_num:
HEP:
20.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.91
Avg Expression:
280.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -1.79675246230816 | 0.00882370744549028 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 5.30804444157768 | 0.00405190800185637 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -2.30312644319253 | 0.0026668042441691 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.20896270151174 | 5.01647820716232e-17 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.45878237270629 | 7.26407942635452e-21 |